rs50262271 SNP Detail

Summary

• ID
  rs50262271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82515643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGGAC CCAGAAACCA
  AGGAGTCAGC CCCTCACTCT CACAAGTTTG TACTCATTTC AGTTGGATTC TAAATCTCTG
  CACTCACCAG ACCTCTAGCC TTCTGTGCCG GACCTTGTCC CCAGGACCCC GAGGAAAACC
  CTTCTCTTTC TCTTTAGAGA TGGCTTCTTC CTCCTTGATG CTTCCTCCAG CACTAAGCGC
  R
  TTCCAGCTTC TCACTGGATG GCACCTGCTT GGCCTCTCGT CTCAGTAGCT TCTCAGTTAC
  AACCTTTACC TGGATTCTGT TCCAAGAGCC GAAATGAACA CAATGTTGCT GCTTGGTTAT
  GGGTTTGATA AGATTCTTAT CACTTAAGGC TAGAATGTTG TTTTTGATCA CCTGACATAG
  CTCAAGGCTG CGTCGGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61656683	NES17599894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50262271					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656683	NES17599894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82515643 () rs orientation: forward

Symbol	Name	Function Class
Gm61154	predicted gene, 61154	within coordinates
Rr387523	regulatory region 387523	1791 bp downstream
Rr469294	regulatory region 469294	911 bp distal
Rr469295	regulatory region 469295	765 bp distal
Rr469296	regulatory region 469296	133 bp distal
Rr469297	regulatory region 469297	683 bp proximal
Rr469298	regulatory region 469298	1242 bp proximal
Rr469299	regulatory region 469299	1310 bp proximal
Rr469300	regulatory region 469300	1513 bp proximal
Rr469301	regulatory region 469301	1772 bp proximal