rs50264206 SNP Detail

Summary

• ID
  rs50264206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85424685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAAAGA GCCCTCACCC
  ATCTCGGCCG AGCAGGAAGA GGGCAGGAAT GTCAGCTGTG CGTTGAGTAC TATCCTGGAT
  CATCTCCACG TAGAAACTGT CATTGTCAAC TGCATTGTCC GAGATGATCA CAGCCCGCCC
  ACCATGCTCC TGTACCACCC TGGTCTTAGA GAGGAAGGAG CAGCCCCTGG AAGAGGTGGT
  R
  ATGAGATCAA AAGTCAGGCA GGTGCTAGCT GCCCCTCCCT TACACCCTCT CTGGGAGGCT
  GAAAGGACCA TAGAGAACTT GTATTGAGGT TCATCGGTAC ATAGCTGAAA GTAGACAAGA
  CATTTCTTAA AGATTTGTAA AGGATGAATT ATTTAAAAGT CTACATTTCA AAGTACCATA
  AGCTGTAGTC AGAATCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906709	NES15956508	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50264206					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906709	NES15956508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85424685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pradc1	protease-associated domain containing 1			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr633221	regulatory region 633221			1165 bp distal
Smyd5	SET and MYND domain containing 5			1268 bp downstream