rs50265707 SNP Detail

Summary

• ID
  rs50265707
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:63191367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA GTCCGCACCC AGCAGGGGCA
  W
  TGACGGCAGC CTCAGCCCAC GCTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145830441	ENSMUSSNP6135482	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50265707					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:63191367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9409	CpG island 9409	within coordinates
Gm64917	predicted gene, 64917	1737 bp upstream
Tssr145535	transcription start site region 145535	973 bp downstream
Tssr149008	transcription start site region 149008	1912 bp upstream
Tssr149009	transcription start site region 149009	1680 bp upstream
Tssr149010	transcription start site region 149010	1649 bp upstream
Tssr149011	transcription start site region 149011	1477 bp upstream
Tssr149012	transcription start site region 149012	1336 bp upstream