rs50266716 SNP Detail

Summary

• ID
  rs50266716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78523473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCGGCAT GTGGGACCCG
  CCAGGGGGGC TTTCTTTAGG GTCCTTGTGC TGCGACAACT TGTCAAAGAA CGTCGTTCTA
  GCTGTAGTTC ACGCTGCTCT GCCTTTTGCC TCGCAACTTG TTGCTCCTCA ATAATGTACC
  TCTTTTTCAG AGACTTTTTT TTTTCTAAAC TGGATGTTTC TACCGTGACA CTGTCAGTGT
  R
  ACTGAGGTGA CCGGAGTAGG ATGAGAATGC TATATCAAAG ACTGTAGGAA GATTAACAAA
  AATTAGACTG TATAAATTGC TCCATTTCTT AAGTGGTTTT TTTTTTCCCC CAGCAAAGAA
  ATCGTTATTT TTACGTGTGT GTGTTCATTT GTAGCTCAGG CTGGGCAGTC TTCAGTTTTG
  AGTGGCAGGA GTCTAGGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss61426856	NES16809513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs50266716					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426856	NES16809513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78523473 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	107 bp distal
Gm69315	predicted gene, 69315	534 bp upstream
Rr683597	regulatory region 683597	1595 bp distal
Rr683598	regulatory region 683598	635 bp distal
Rr683599	regulatory region 683599	44 bp distal
Tssr86295	transcription start site region 86295	717 bp downstream
Tssr86296	transcription start site region 86296	698 bp downstream
Tssr86297	transcription start site region 86297	682 bp downstream
Tssr86298	transcription start site region 86298	448 bp downstream
Tssr86299	transcription start site region 86299	405 bp downstream
Tssr86300	transcription start site region 86300	382 bp downstream
Tssr86301	transcription start site region 86301	359 bp downstream
Tssr86302	transcription start site region 86302	310 bp downstream
Tssr90659	transcription start site region 90659	534 bp upstream