rs50267293 SNP Detail

Summary

• ID
  rs50267293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCATC AAACTGAGGA
  GTGGTGAGGT AAACTGCTCT TGGGACTGAA ATAGCTCTGT CTAGTGTCTG GTAATGTACT
  GAACACATAC ATAGCGCAGT TATAAGAAAT GTATGAGACC TTCCTTGTCT TTGCTCTGTG
  TGTAAGACGT GTCCCCTGCA CCTGTATAGT GGCTGTGGCT TGAATGACTC TCAAAGTTAC
  Y
  TCTATACATA CCTCTATGTC CATTATCGAA TCAGCTCTTC TGACAATTGG AAAGAACTCC
  TATTCTAAAA GGCAATGGAT TCCTTAGATC CTTTCACCTT ATTGTATCCT TGTAGGGAAA
  TGCAAAATTT TAGAAACGAT TCTAATAAAC GAATCTTCCT AAGTAAATCC TTTTCAATTT
  CTTTTAATAT TCGAGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014972	ENSMUSSNP1081729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50267293					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	375 bp proximal
Met	met proto-oncogene	860 bp upstream
Rr626799	regulatory region 626799	370 bp proximal
Rr626800	regulatory region 626800	534 bp proximal
Rr626801	regulatory region 626801	577 bp proximal
Rr626802	regulatory region 626802	1109 bp proximal
Tssr55050	transcription start site region 55050	492 bp upstream
Tssr55051	transcription start site region 55051	615 bp upstream
Tssr55052	transcription start site region 55052	809 bp upstream
Tssr55053	transcription start site region 55053	886 bp upstream
Tssr55054	transcription start site region 55054	945 bp upstream
Tssr55055	transcription start site region 55055	961 bp upstream
Tssr55056	transcription start site region 55056	987 bp upstream
Tssr55057	transcription start site region 55057	1152 bp upstream
Tssr55058	transcription start site region 55058	1192 bp upstream
Tssr55059	transcription start site region 55059	1231 bp upstream