rs50268718 SNP Detail

Summary

• ID
  rs50268718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116386944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATAGA GTACAGGAGA
  AAATACGCCA GGAACAACAA GGCATGGCTT TAACAATTTA GAATGGGTCA TATTCACTAG
  CTTTGCAACT TTTCTAAATG CTAGTTACAG TCTTTTATGT TTTATGCATT TAATTATAGG
  CACTGGGAGA AAAGCAAGGG AAACAATGTT GGCAGGTCTG CCCCACAGAT CCTATCAACC
  Y
  GGATGCAACA GGATGGCCCA ATTATTAAAT CCAGAGGCCA GTGGTTAGGT GTGATTCTCA
  GCTCTTTCTA TTAGCTGCTA ACTCTATAAT CCTGACTGCT TCATGTAAAT AATAGTATAG
  ACTTTCTATA TTAAGTATAG ACTTACTATA TTATTAAGTA GAATAATAGT ATGACTTGCT
  TCCTAAGGTT TGTGAAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60436766	NES15940888	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T		C	C
ss320895788	CHEV_3_116296213	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs50268718					SNP	T	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436766	NES15940888	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116386944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1181 bp proximal
Rr397965	regulatory region 397965	1468 bp upstream
Rr583746	regulatory region 583746	1155 bp proximal
Rr583747	regulatory region 583747	1452 bp proximal
Rr583748	regulatory region 583748	1533 bp proximal
Rr583749	regulatory region 583749	1726 bp proximal
Rr583750	regulatory region 583750	1894 bp proximal
Sass6	SAS-6 centriolar assembly protein	1687 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1664 bp upstream
Tssr35316	transcription start site region 35316	1521 bp downstream
Tssr35317	transcription start site region 35317	1553 bp downstream