rs50269196 SNP Detail

Summary

• ID
  rs50269196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTATCTA AGGCTGTGAA
  ATGAGCTCAG CAGAGATTCT GTCTTCTCAC TCTCCTGCCT CCTCCTACTT CTCTCTGGGC
  CATCAGCTCA GGGTTGCTGT GTTTGGATTG GCATCTCTCA AGAGTAGAGA GTGAGTGTCT
  GTATAACTGA CGGTTGATTG AACTTATTTC TGGGAGAATG TCTGGTCAAG TCCACCATGA
  Y
  TTTGCAAGCA AGCTGTTCGT TCCTGTTAGG TTGCTTTCCA ATTACAGGAC CTTCACAGAC
  TTCTGAAAGA TGTCCCTCAT ATACCTGGCT TGAATATATT TCTTTAAAAA TAAAGATTAT
  ATGATGAAGT GAACTGTGAA TTTCCTAAAA TTCAATGCTA GCATAATAAC ATATACTCTT
  TTTATATATG CACACATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134853002	ENSMUSSNP5180104	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50269196					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766496 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	883 bp upstream
Rr575767	regulatory region 575767	393 bp proximal
Rr575768	regulatory region 575768	894 bp proximal
Rr575769	regulatory region 575769	1769 bp proximal