rs50270354 SNP Detail

Summary

• ID
  rs50270354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28036879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCCTGT TCTTCCACTG
  TCAAGCCCTC TCCTTCCCCT GAGGTCTCTT AGAACATTCC AGGCGTCTCC TGTTTCTGCC
  AGCAGGTGGG GTACTGGCAC TTATAAATCC ACTGTTACTT GCTCCAGCCT GGTTTTCTTC
  TCTCAGTGCT GGGATTCTCC TGTCTTCCCT GATTTTTATC TCCAGGAGAA ACTGTTGGAC
  Y
  AGGGCCTGGA TTAGGGAGAT GAAGAGGTGG ATGTTAGATC TGAGCTGTCT CTGGGTTTGC
  CTGCCTGACG TTGTGGCGCT AACAAACACA AATCCCTTAT GTGTCATAGG TGTTGAGTAA
  CTTAGCTTTA TCATCTAAGT TCTGCTCGGC AGCAAATGAA TCAGGTTTTC CTTGCCTTGT
  TTGAGCCTGT GTTACACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320689844	CHEV_3_27881652	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50270354					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28036879 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574516	regulatory region 574516	within coordinates
Rr574517	regulatory region 574517	1016 bp proximal
Rr574518	regulatory region 574518	1454 bp proximal
Tssr28637	transcription start site region 28637	1415 bp upstream
Tssr28638	transcription start site region 28638	1542 bp upstream
Tssr28639	transcription start site region 28639	1905 bp upstream