rs50270367 SNP Detail

Summary

• ID
  rs50270367
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:74921513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATAAAT AAGGAAGACA
  CCCAATTACT GTGGCCTCCC ATTTAGATTT TCTAGCCTTA AGAATTGTAA GAAATAAATG
  TGGATGATTT ATAAATGACA TTGCTGGTGG TATTTTGTTA TAGCAGCCTA TTGGCTCTAA
  GATGCCAGTG TGCCTCATAC CTTGTGCTGT CTTCTTGCTA GTACTTATCA TAGTGATATG
  W
  ATGCTGCCTA CTGACCTGTA AAGCTGTTTA GTGATAGGAA CCGTTGCTGT TTTGGACAAA
  GGGTATATTT CTCAGGATTG AATCTCATGT ATGACACACT TTCAGTAAAA TATACCCTTC
  CATGAGTCGG TTATGAATTG AATAACAGTA TGTCTCTTAA TCTAAGTTAT AAGGAATCTG
  ATAATCATAC ATAGCCACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62461881	NES17263453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50270367					SNP	T	T	T	T	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62461881	NES17263453	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:74921513 () rs orientation: forward

Symbol	Name	Function Class
Htr2a	5-hydroxytryptamine (serotonin) receptor 2A	within coordinates
Tssr126578	transcription start site region 126578	465 bp downstream