rs50271336 SNP Detail

Summary

• ID
  rs50271336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGATATGT TTCACTGAAT CATCACTCAG AGAGTGCACT
  AGTGATCAAA GTATTGCATT GTGATGATTC GTCTTGGTGT CAGCTGGGCC TCACTTAAGC
  R
  TCACCTAGGA GACACACCTC TGAGTGTCCT ATAGAAGTCT AAAGGAGTCC CTTCTTGCTG
  ACTCACTGAA TACATGCATC TCTCCGTGGT GCTTCCAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137438955	ENSMUSSNP3836055	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323950897	CHEV_12_27126873	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50271336					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492007 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	895 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	738 bp downstream
Tssr112998	transcription start site region 112998	1733 bp upstream
Tssr112999	transcription start site region 112999	1780 bp upstream
Tssr113000	transcription start site region 113000	1904 bp upstream
Tssr115902	transcription start site region 115902	849 bp downstream
Tssr115903	transcription start site region 115903	1181 bp downstream
Tssr115904	transcription start site region 115904	1198 bp downstream
Tssr115905	transcription start site region 115905	1503 bp downstream
Tssr115906	transcription start site region 115906	1631 bp downstream
Tssr115907	transcription start site region 115907	1686 bp downstream
Tssr115908	transcription start site region 115908	1726 bp downstream
Tssr115909	transcription start site region 115909	1812 bp downstream
Tssr115910	transcription start site region 115910	1864 bp downstream
Tssr115911	transcription start site region 115911	1914 bp downstream
Tssr115912	transcription start site region 115912	1928 bp downstream
Tssr115913	transcription start site region 115913	1963 bp downstream