rs50271642 SNP Detail

Summary

• ID
  rs50271642
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152387235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTAAA GAAGAAGCCA
  TGTATAAAGG CAGCTAGACA CAGCCTCTCT GACTTGTGGA CACTGTTACT GTCTGAGCAG
  AGTGGTCTCT GTGAAGAGAT GTTTTGGCAG CTCAGATACT AGAGTGTCCT TTGGCTTATG
  TGGCCCTGAG GGGAGGAGGC AAGGGGCCAA GGCTGGCAAG TATGCTCAGT GGGTGGACAT
  T
  AGGGCGGATG GAGACACCAG CATGAGCTCC TCCATCAGGA GGGGTATGTG TTACGTGATT
  GAAACCCATG GTCCTTCACT GTAACTGAGG TCTCGCTTAC TGAAGGGAAT CATAGACAGG
  TACAAAGGGG TGCAGCCATG AGCGTGGCTG CCAGCCACAC AGTGCTCTAG AAGGAGTCGT
  GTGGGGAGAA GGCCTGTGCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148080469	ENSMUSSNP2059064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50271642					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152387235 () rs orientation: forward

Symbol	Name	Function Class
Gm70210	predicted gene, 70210	509 bp downstream
Icmt	isoprenylcysteine carboxyl methyltransferase	within coordinates
Rr605836	regulatory region 605836	453 bp proximal
Rr605837	regulatory region 605837	1917 bp proximal