rs50272296 SNP Detail

Summary

• ID
  rs50272296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65018747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA ACGCACTCTT TGGCATAGCA
  R
  TTTCACTTTT AATAAGCTGA CATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144901059	ENSMUSSNP934058	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50272296					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65018747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	1364 bp proximal
Rr647944	regulatory region 647944	108 bp proximal
Rr647945	regulatory region 647945	1324 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr72804	transcription start site region 72804	1875 bp downstream
Tssr72805	transcription start site region 72805	1890 bp downstream
Tssr72806	transcription start site region 72806	1909 bp downstream