rs50272839 SNP Detail

Summary

• ID
  rs50272839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165505443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGCGCACA GCTGAGGGCT TGTCTGGAAG CCAGGGGCCC
  CAGGCTTATG GTGTCATCAG AGGCTAGTGA ACAGAAGGTA GGAAGCTGAA GACTTTTCCC
  Y
  GTCAGTCAAT ATGTATCTGC TGGATGGCTT TACAAACCAT GGCTATTTGA TTAAATTGCC
  TGGTATAACT CAGCCACAGT CCCTTGGAAA TTCCAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146004897	ENSMUSSNP5809541	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50272839					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165505443 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	1358 bp proximal
Tssr14776	transcription start site region 14776	948 bp downstream
Tssr14777	transcription start site region 14777	1044 bp downstream