rs50273295 SNP Detail

Summary

• ID
  rs50273295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151349841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCCTCT GCAAGAGCAG
  GTAATGCTCT TACTACTGAG CCACGTGGCT AGCCCCATGT CAGGGAATTC TTATACCCAG
  TGTTTATGTA CTATCCTGGT CTTCATCTTG GAGAATGTCC ATCACTCTTT TCCGTGCAGA
  GAAATCAGCC TGTGGACACA GTCTAGGGAC AGGACATGAG CAACCTAAAA GCATAAAGGA
  Y
  TCATGCTCTT CCAAAGAGAA GAGGACATTT TTGATTAAAT AGAGAAGTCT TGGCTTTTTA
  AACTATGCTC CTTGATCTTT CCCCCTGAAC TGATATAGAC ACATTTTGTT CCCCCCTTTT
  GTCTTATTAT AATATGACAA GACATTACTG ACTGTGGCCC TGATTAACGA TGTGAACATG
  TTTCTTAAAT ATTTATCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60861253	NES15995690	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T	C	T	T	C	T
ss144728447	ENSMUSSNP3554598	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50273295					SNP	C	C	T	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861253	NES15995690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151349841 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr117371	regulatory region 117371	560 bp proximal
Tssr54686	transcription start site region 54686	1774 bp downstream
Tssr54687	transcription start site region 54687	1796 bp downstream