rs50274657 SNP Detail

Summary

• ID
  rs50274657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80158652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTGT TTGTTACTTT
  GTCCTTCTAA TTTACTGATT GGTTGTTAAC ACAAAGCAGA GCTGGAGTGG TATGCATGCT
  TTTACAGTGG CTGGACTTTA TTTTGGCATT ACTTTATCCA AACTGATCTA TAATTTAGAG
  ATTTACTGCT CTAGCATATT TGCAGCAATC GCTGGTATCT TGCAAAATAA AAAGCTGAAA
  R
  TGCTCGACAT TATCAATTTA AAAATATTTG TACACATTTT ATGGAAGCAT TTGGTACAGT
  CAGGCAAAAA TTGTGGAGTA TGAAGAAAAC GTACAGCGTG ACAATGGATG GCAAGAACAG
  GTACAGCCTT TTTACCACAG CAAAGTCGGA GGAAATAGCA TCTTTCCGAG ACCTTTAACG
  GTGTTTCAGT TCTTGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61431701	NES16818519	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50274657					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61431701	NES16818519	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80158652 () rs orientation: forward

Symbol	Name	Function Class
Myo6	myosin VI	within coordinates
Rr201868	regulatory region 201868	749 bp proximal
Rr212325	regulatory region 212325	1830 bp proximal