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rs50275868 SNP Detail
Summary
  • ID
    rs50275868
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135874744 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTCATTCTC TACTTTAGAC
    AGCTTTCCCG AGTCAACGGC TTCGTGAATG GGGCACAAAT TAGAAGCCCA GTAAGAGCTT
    GTTGGGGGAA AAAAAAAAAA AAAAAAAAAA AAAGAAAAAC AAAACAAATC TTAGTTCTGC
    ATGAAATGGG ATGATAGTAC ATCCCTTAAA ATTGTATGGT TCGGATATAA AAGACCACAC
    R
    TGAAATATTT TCCTGGCTCT CTTTGAACTA TGCAATTTAG AGGCCCTAAC TGATCTCGAA
    GCTCTGAAGC ACACACACGC TTGCACGCAC ACACATATAT GTTAGCACAT GGCCACATAT
    TTCTAAGTGA CAAAGCAGGG ATTCAAATTC ATGTCTGCGA CACATGGTAA TGGTGGCCTT
    CCAAGAAGGC AGTGCACCAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss147559905 ENSMUSSNP6986921 ENSEMBL ENSEMBL_Sanger f SNP A G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs50275868 SNP A G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135874744 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15099 CpG island 15099 100 bp proximal
Gm68296 predicted gene, 68296 within coordinates
Rr377254 regulatory region 377254 within coordinates
Rr602286 regulatory region 602286 1900 bp distal
Rr602287 regulatory region 602287 236 bp distal
Rr602288 regulatory region 602288 within coordinates
Tssr39669 transcription start site region 39669 185 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory