rs50275875 SNP Detail

Summary

• ID
  rs50275875
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGAAA TCCTTGGATG
  CTCTTTGGAA TAAGTACAAG GATAAGTCAA TGATGTAGTC TCTGGTAAAT GTGTAGTCTC
  CCTCACAGGG TTCAGATTTC AGCTCATTTT CTATGATCTT CAAGATTTCA TGAAAGTAAT
  TGTGACTGTA ATCACGCTTT TGCTTCCAAA TGTTTTTAAG TGTTTCTGAA AATTTTAACC
  G
  AATGTTGTTG GTGGTCTTTT TGATGGATTC AACATGACAG GTTTCTGAAC TCTTTCTATG
  TAAATGGTAT CTTTTTTTCA TTTGAATATG TTTGTCATAC AAGATTTCAA ACTTTTCTCT
  AGACTTTATT TTTAGTCTTT CCACAATATT TTTGTCCTTC TTGAAATACT CCAGAAGGAT
  ATTTTCGGAG TCCAAATCAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145614823	ENSMUSSNP3854663	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50275875					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104920 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74119	transcription start site region 74119	1742 bp upstream
Tssr74120	transcription start site region 74120	1725 bp upstream
Tssr74121	transcription start site region 74121	1662 bp upstream
Tssr74122	transcription start site region 74122	1645 bp upstream
Tssr74123	transcription start site region 74123	1612 bp upstream
Tssr74124	transcription start site region 74124	1567 bp upstream
Tssr74125	transcription start site region 74125	1556 bp upstream
Tssr74126	transcription start site region 74126	1520 bp upstream
Tssr74127	transcription start site region 74127	1369 bp upstream
Tssr74128	transcription start site region 74128	1289 bp upstream
Tssr74129	transcription start site region 74129	758 bp upstream
Tssr74130	transcription start site region 74130	709 bp upstream
Tssr74131	transcription start site region 74131	498 bp upstream
Tssr74132	transcription start site region 74132	322 bp upstream
Tssr74133	transcription start site region 74133	327 bp downstream
Tssr74134	transcription start site region 74134	554 bp downstream
Tssr74135	transcription start site region 74135	637 bp downstream
Tssr74136	transcription start site region 74136	705 bp downstream
Tssr74137	transcription start site region 74137	771 bp downstream
Tssr74138	transcription start site region 74138	801 bp downstream
Tssr74139	transcription start site region 74139	835 bp downstream
Tssr74140	transcription start site region 74140	890 bp downstream
Tssr74141	transcription start site region 74141	1290 bp downstream
Tssr74142	transcription start site region 74142	1433 bp downstream