rs50276549 SNP Detail

Summary

• ID
  rs50276549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGTCAG ATCTCATTAC
  GGATGGTTGT GAGCCACCAT GTGGTTGCTG GGACTTGAAC TCAGGACCTT CGGAAGAGCA
  ATCAATGCTC TTAACCACCG AGCCATCTCT CCAGCCCGGC AAGATCTCTC TTGTTCACTG
  TTATATATGT CAGGCAAGCA GTCTCAAACT TCTATAGAGT CTCCTGTGTG TGCCTCCATC
  Y
  TGCTGTAAGA ACGCTGGGAT TACAGATATG TACCATAGCA CCTCATGCTT ATGTGGTTAA
  GAGCTCTACC CTTTGAGTCA TCTCCCCTCA TTCATCAAAT GCCACTTGAA CTACATGTCC
  TCTGGAGGTG CTCCTGACTC CTAATTCTTA CTCTTTGCTG GATTTCCAGT AACTAACATC
  TATTTTGTAC CTCTTATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147622999	ENSMUSSNP716262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50276549					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1425 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1940 bp upstream
Rr397334	regulatory region 397334	1737 bp upstream
Rr565537	regulatory region 565537	1843 bp proximal
Rr565538	regulatory region 565538	1951 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1936 bp upstream
Tssr20336	transcription start site region 20336	1947 bp upstream
Tssr20337	transcription start site region 20337	1968 bp upstream
Tssr26490	transcription start site region 26490	1777 bp downstream