rs50277297 SNP Detail

Summary

• ID
  rs50277297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129447044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT CGAGATCCAA CCAAGTGTCA
  Y
  TTGTTATCCC TGATGGGCAG CATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147587935	ENSMUSSNP2897673	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320505121	CHEV_2_129430860	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50277297					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129447044 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	1332 bp distal
Rr564957	regulatory region 564957	813 bp distal
Rr564958	regulatory region 564958	1111 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20146	transcription start site region 20146	1380 bp downstream