rs50277363 SNP Detail

Summary

• ID
  rs50277363
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGAGAC AAGGTAGGTT
  AATAAGGGCG TGATTCTCAT TTCTGGCTTT GCTTACTGCT GGGAGTTGGG TGGGGTGGCA
  GGAATGTTCG GCCAATCAGA TGACTTCCAG GTCCTCTGTC CCTGTGCAGC TGTTACGGTA
  GAAAAGCTTT CCTTTAGAGC AGAGCCTCCC TCAGACTCAA GTGCCAACCA ACGTCTCCGA
  S
  TGGTCCTCAC TTAGCTTTTT ACTACTGTAG AGAAGCACCC GCAATTACTT AAAAAGAGGA
  TTAAGAATAC AATTCAGGCA TGTCGGTTCA TGGTTGAGAG GGAGATGGGG AGGAGGAGAG
  AGAGGGAGTG AGAGCAGGAT AAGGTAGCTG ACCCACTGAC CTACAGCCCT CTGCTAGGCC
  CCACCTCCCG AAGTCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60993613	NES16129851	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50277363					SNP	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993613	NES16129851	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1496 bp proximal
Gm38989	predicted gene, 38989	within coordinates
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1707 bp downstream
Rr645337	regulatory region 645337	within coordinates
Rr645338	regulatory region 645338	692 bp proximal
Rr645339	regulatory region 645339	1568 bp proximal
Rr645340	regulatory region 645340	1630 bp proximal