rs50277797 SNP Detail

Summary

• ID
  rs50277797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCTTGCC CAGCAGGAAC AGGGAGGAGT CCCTACAAAG
  AAAAGGATTT TTTCAAGTTA TGCAAATGCA ATGTCTTATT GGTCTCAGTT TATGGGTTAA
  R
  ATAGCTTCAA GACAGAGCGA ATTTAGAGTC AAAGGCGCCC AAGGAAGTAG GAGGTTTAGC
  AAAATGCCAA GATGGCGGTG CTTTTGTGTA AGAACCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146216154	ENSMUSSNP5880060	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325768029	CHEV_19_23214770	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50277797					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	374 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	within coordinates
Klf9	Kruppel-like transcription factor 9	946 bp upstream
Rr405898	regulatory region 405898	320 bp upstream
Rr545290	regulatory region 545290	127 bp distal
Rr545291	regulatory region 545291	within coordinates
Rr545292	regulatory region 545292	824 bp proximal
Tssr155578	transcription start site region 155578	169 bp downstream
Tssr155579	transcription start site region 155579	542 bp upstream
Tssr155580	transcription start site region 155580	660 bp upstream
Tssr155581	transcription start site region 155581	676 bp upstream
Tssr155582	transcription start site region 155582	699 bp upstream
Tssr155583	transcription start site region 155583	739 bp upstream
Tssr155584	transcription start site region 155584	784 bp upstream
Tssr155585	transcription start site region 155585	846 bp upstream
Tssr155586	transcription start site region 155586	903 bp upstream
Tssr155587	transcription start site region 155587	1362 bp upstream
Tssr155588	transcription start site region 155588	1396 bp upstream
Tssr158621	transcription start site region 158621	357 bp downstream
Tssr158622	transcription start site region 158622	687 bp downstream
Tssr158623	transcription start site region 158623	1776 bp downstream