rs50278458 SNP Detail

Summary

• ID
  rs50278458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57404075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA ATCCTCACTG TTATTTATTT
  W
  TTTTTTTTTT AAGATAGAAT CTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145810003	ENSMUSSNP124888	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss325427541	CHEV_17_57236498	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50278458					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57404075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9395	CpG island 9395	309 bp distal
Gm11110	predicted gene 11110	within coordinates
Gm46589	predicted gene, 46589	within coordinates
Gm56907	predicted gene, 56907	within coordinates
Rr529274	regulatory region 529274	104 bp distal
Rr529275	regulatory region 529275	308 bp distal
Rr529276	regulatory region 529276	1645 bp proximal