rs50278489 SNP Detail

Summary

• ID
  rs50278489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127653213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCCTG AGATTCAGAT
  GTAAACCTTT TGCTCAACTA CTGCTCCCCC ACTGTGCCTG TCTACTTCCC ACCATGATAA
  CCATGGACCA ACCTTCTAAA ACCGTAGGCA AGCACCGGAT TCAATGTTTT ATTTTATAAG
  AATTTCCTGG GTCACAGTGC TTCTTCACAG CAGTAGAACA AGAGCCAAGA CAGAAATCAA
  Y
  GGGAAACTAC ACAAATCCAA CCCTGGGAGG ATGACAAACA GCAGAGACCC TTCAGGAATG
  AAGGTATGGG TCCCTCCTCC AGGGGAAGAA CCAAGATCTG CCAAGGTGCT TGCTGAGGGT
  GGAGGAAACA CAGAAACAGT AGAGGAGGAA GATAGTTATA ACTACCAGCT TTGTCATGTA
  ACCAATTGCA AAAAACAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873323	ENSMUSSNP311594	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957574	CHEV_3_127562482	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50278489					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127653213 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	1834 bp proximal