rs50280555 SNP Detail

Summary

• ID
  rs50280555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52154630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTATTT GAGTTTTGTG
  TTTACTAGTT GGAGCTTTTG ACCAAGGGGT CAAAACTTTT AATTTATACT TATTTTTCTT
  CCTTTCTAGA AAATTCTGAA TTTAGCGCCT CCAGAGTGTT TTGAAAACAC TTCTGTTTCA
  ACAGAGGACA CTGCAAGTCT CTGGTGTCAA GTGTAAAGAC CTTGCAGTGG TGTGGCATCT
  K
  TACCAGTTCA AGGTGACATA TGACCAAGAT AGTTGCCAAT GACAACTGTT GCCAGCCACT
  TGCTAGAAAT CTTCAAGGGT AACATGACGC AGAGTGCATT TCCTGTATGG AGAGCATAGA
  ACGATTTACT TTTTTATCCT TATCGATGTC TTTGGAATGT TTCTGGTAAC TGAGGCTTAG
  CAGTCTAGTC TGTTCTGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215762	NES15721506	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50280555					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215762	NES15721506	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52154630 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Gm32597	predicted gene, 32597	within coordinates
Rr516984	regulatory region 516984	224 bp distal
Tssr141426	transcription start site region 141426	1804 bp upstream
Tssr141427	transcription start site region 141427	1108 bp upstream