rs50301483 SNP Detail

Summary

• ID
  rs50301483
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27491188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGACTGTAAC AAAGACAGTC ACAGAGCCCA GGGGAGAGAG
  GAGATGGCTC CTTGACTAAG GGTATTTGCC CAAGCTTAAT GTCATGTTTG TATATCTAGA
  A
  CTCAGAGGGC GAAAAGAGTT CTGACTTTTC CAAACTGATC TCTGACCACA CACATTCACC
  ACATCATTTG TATATCCCCA CTACAAATAA ATAAATAAAT G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147030419	ENSMUSSNP5951132	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50301483					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27491188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	1465 bp proximal
Gm36962	predicted gene, 36962	within coordinates
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	12 bp proximal
Tssr97144	transcription start site region 97144	1613 bp downstream
Tssr97145	transcription start site region 97145	1623 bp downstream
Tssr97146	transcription start site region 97146	1639 bp downstream
Tssr97147	transcription start site region 97147	1703 bp downstream
Tssr97148	transcription start site region 97148	1737 bp downstream
Tssr97149	transcription start site region 97149	1827 bp downstream