rs50301640 SNP Detail

Summary

• ID
  rs50301640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTCAG TTTTTCCCTT
  CCCAACACAA TGATGCTTGG ATCACATGGG CCATGTGCTG TGTGTTTCAG AACCTTAGGG
  AATCACGCCA GGTGCGACTT GAGAGACACC TATAGGCATT GATTGCTTGG AGCCCCAGTT
  GAGAGAAAGC TCTCTCCAGG TGCCAGAGAG ACTTACACTA AGATCCACTC GTTCAGAGAG
  Y
  GTTAGCAAAG GTATAGCCGC CGCAGGTCAC AATCCAGGTA GTGAGGATGC CTTGGTTTCT
  GGGGCAGAAC CAGAGAGGCT GCTGCTGCAT TGGAGGCTTA GCTGCTGAGG GCCGGGGACA
  GTGTGAGGCA GTAGATTTCA ACTCTAGGAG AGGCCTCCCT GACCTGAGAG CCTCCCCATT
  CCAGGTGTGT TTAGAAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60554911	NES16570042	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50301640					SNP	T	T	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554911	NES16570042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1517 bp distal
Gm56886	predicted gene, 56886	547 bp downstream
Rr339410	regulatory region 339410	713 bp distal
Rr392454	regulatory region 392454	351 bp upstream
Rr405112	regulatory region 405112	1807 bp downstream
Rr405113	regulatory region 405113	1435 bp downstream
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	1576 bp downstream
Tssr5045	transcription start site region 5045	1072 bp upstream
Tssr5046	transcription start site region 5046	1019 bp upstream
Tssr5047	transcription start site region 5047	1008 bp upstream
Tssr143232	transcription start site region 143232	1860 bp downstream
Tssr143233	transcription start site region 143233	1809 bp downstream
Tssr143234	transcription start site region 143234	1766 bp downstream
Tssr143235	transcription start site region 143235	832 bp downstream
Tssr143236	transcription start site region 143236	799 bp downstream
Tssr146955	transcription start site region 146955	1658 bp upstream
Tssr146956	transcription start site region 146956	1041 bp upstream
Tssr146957	transcription start site region 146957	971 bp upstream