rs50301820 SNP Detail

Summary

• ID
  rs50301820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122836760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAGGTA GAATGCATTT
  GAGCTTTTTT TAGTCAGCTG TAAAGCAGGA GTCTGAGTAC CACACCCATG ATGCTTTGCA
  AACAGAAACT GTTGCTTAGA GCCAACAGAG CCTGGGTCCC CAGTGTGTTG AGTTCAGGGC
  AGTTCGAGGC TGTTTATTCT GCTAACAGTG GCTGAGGGAC TGGAAAGGCT AACATGGTCT
  Y
  CATTTCTATT TGTCTTCAGA CCGAAAGCAA ACAAAAAAGA AAAAACAGAT TTTTTTTAAA
  ATAAGGAGAC GAGCCACGTC AGAGGCACAC CCTTGACAGC CTTGCTTTGT TTTGATTCAA
  ATCTTCCCTT AAGTTGGAAG CTGTCCCGTG ACAAGAGCAC AAGACGTTCA CCCTGAGAAG
  TTACGTTTCC TGATGCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149189862	ENSMUSSNP439978	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50301820					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122836760 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	1097 bp upstream
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	within coordinates
Rr619948	regulatory region 619948	within coordinates
Rr619949	regulatory region 619949	1518 bp proximal
Rr619950	regulatory region 619950	1904 bp proximal