rs50301839 SNP Detail

Summary

• ID
  rs50301839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:71957263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCC AGGGGAGTGT GATTGGTGCA
  R
  TTCTGAGCTC TGAACTCAGA AAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss61019289	NES16107377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs50301839					SNP	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61019289	NES16107377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:71957263 () rs orientation: forward

Symbol	Name	Function Class
Gm39035	predicted gene, 39035	within coordinates
Mctp2	multiple C2 domains, transmembrane 2	907 bp upstream
Rr648817	regulatory region 648817	995 bp distal
Rr648818	regulatory region 648818	659 bp distal
Rr648819	regulatory region 648819	338 bp distal
Rr648820	regulatory region 648820	602 bp proximal
Tssr67176	transcription start site region 67176	601 bp downstream
Tssr72929	transcription start site region 72929	868 bp upstream
Tssr72930	transcription start site region 72930	760 bp upstream