rs50304600 SNP Detail

Summary

• ID
  rs50304600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20512726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTTCCC GGGCTCCAGG
  CAACTAGCCT TTTGTATATA CATACTTCAT TGCCTACACC TACCTCTCTG ATCTCAGTGT
  CTTAGGAGTG GCTCTTTGCT GTGAACCTGC CTCTCCTACC TGGGTGCTCT CATCCTCAGG
  AGTCAGTTTG CAAATGCTGG CCAAGTACCC CACCGAACGC TAGTTTTTGC CTAACACTTG
  Y
  TCAGAGCGTC TCCCAGCTGG TTGATTAAAG GGTCGGAAGC CCCAGGTGGA GCATCTGTGA
  GCAAATTGAT AACCTCTCAC GCTCACAGAT AATTTTATTC CTATTACCCC CCCCCCAAAC
  AAAACAAAAC AAACAAACAA AACAAATCAC ACTTATTCCG AGCAGAAAAA GTCCAGGTCT
  TCCTATAGCC GCTGAGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198413	NES15711517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50304600					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198413	NES15711517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20512726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	220 bp distal
Cpgi8084	CpG island 8084	1679 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	1093 bp downstream
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr325071	regulatory region 325071	within coordinates
Rr325072	regulatory region 325072	874 bp proximal
Tssr137487	transcription start site region 137487	654 bp downstream
Tssr137488	transcription start site region 137488	629 bp downstream
Tssr137489	transcription start site region 137489	1024 bp upstream
Tssr137490	transcription start site region 137490	1041 bp upstream
Tssr137491	transcription start site region 137491	1065 bp upstream