rs50306008 SNP Detail

Summary

• ID
  rs50306008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45312929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCTGAGG CAGGAGTGAG
  CCCTGTAAGG TCAGAGAGCC ACTAAGGGGA CCCTATGGTT AGAATGGACA GAAAAGTTGG
  GGTCAGGGTT AGAGAGTCCA CTAGGATGAG ATTAAGAAGG AACCCAAAAA TGAGAGCCAG
  CAAGAGGAGA AGTTAAGGCT CTTGCCACAA AGCCTGGCAA TGTGAACTCA ATCTCTGGGC
  Y
  CTACGAAGTG TCCTCTGGTC TGCGGACATC TACATGACCC ATGCAGGCTC TCATACACAT
  AATGGATAAC TAAATACATA AACATAATAA GAAAATTTAC GAAGGGACAC AAAAAGGACC
  TGGGCTTAGA AATCTGTATT CAGAGGACCT TGGGCAGGAG AGCAAATGGT TTTATGAGTG
  AAGGGCTGGG TGGGGGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136411177	ENSMUSSNP7226496	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50306008					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45312929 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	272 bp proximal
Rr200381	regulatory region 200381	72 bp proximal
Tssr84781	transcription start site region 84781	1962 bp downstream
Tssr84782	transcription start site region 84782	1913 bp downstream
Tssr84783	transcription start site region 84783	934 bp upstream
Tssr84784	transcription start site region 84784	984 bp upstream
Tssr84785	transcription start site region 84785	1511 bp upstream
Tssr84786	transcription start site region 84786	1543 bp upstream
Tssr84787	transcription start site region 84787	1565 bp upstream
Tssr84788	transcription start site region 84788	1596 bp upstream
Tssr84789	transcription start site region 84789	1622 bp upstream