rs50306030 SNP Detail

Summary

• ID
  rs50306030
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74858538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAGCCA TTTTGTCAGC
  CCATTTTTTC TGTTCTTTAT ATGTCTAACA AAATAAGCCT GGGATAGGGG GTGATGGGTC
  ACACCTCTTG TTGTGTCTTC ATCTATATTC CACAACATTC TACATATTCT ACAATAGCTG
  TTGTCTGACT CCAGATGTTG TGCTAAATTA AGTATTGCGG ACTATCTATG ACTGTTCTGT
  W
  TATCTTCCAT TACCAAGGTT AACCAGGAAG TGATCTCAAA ACAAATCAAA CTTTTGCCCC
  GTTTTTAAAC CACATAAGAC CTTATTAAAT AGTACCCATG GGAAGTCTAC CAGGAGTTAA
  TGTTTGTAGC CATCACTATA TCAACAAAGT CTTCCCATTG TCCAAAGGCC TACTTCCCAC
  TGCCAGAACA TCCCAGTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136638871	ENSMUSSNP492749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50306030					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74858538 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	1624 bp upstream
Cpgi22037	CpG island 22037	1228 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	284 bp distal
Gm68252	predicted gene, 68252	531 bp downstream
Rr401515	regulatory region 401515	580 bp upstream
Rr401516	regulatory region 401516	1473 bp upstream
Rr683033	regulatory region 683033	369 bp proximal
Rr683034	regulatory region 683034	459 bp proximal
Rr683035	regulatory region 683035	829 bp proximal
Rr683036	regulatory region 683036	1551 bp proximal
Rr683037	regulatory region 683037	1842 bp proximal
Tssr86114	transcription start site region 86114	1596 bp upstream
Tssr86115	transcription start site region 86115	1818 bp upstream
Tssr86116	transcription start site region 86116	1900 bp upstream