rs50307089 SNP Detail

Summary

• ID
  rs50307089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94070454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAACTC AGGACCTCTT
  GAAGAGCAGT CAGTGCTCTT AACCTCTGCG CCATCTCTAC AGCCCCATAA AATTCAATTT
  AAAAAATAAT ATTAAAATAA AAGTAAATGT AATTTAGAAA TAAATGAAGG TAAGCAAAGC
  CTCAGCTGCT TTAGACAAGG AAGATACCGG GGACATTCTT CAGACATGGG TAAACCCAAC
  S
  TTCCTTTTGT GACAGGCACA GGACCCTCCT GAGAGTCCAG AAAATCCAAT AATGTAAAAG
  GAAACCTGAC CCCCAGCTAT TTTCAAGAAG TGGGGGGCCA GCTGCAAAGA TCTACCTGAT
  GGCACATCAG ATCTCCATTC CCAGAATCCT AACCTTCCAA CAGGCACCGG TTACCACGGG
  AAGACACCAC AGACAGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60515987	NES16526709	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50307089					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515987	NES16526709	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94070454 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu35	DNA segment, Chr 16, Johns Hopkins University 35	1042 bp proximal
Hlcs	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	within coordinates
Rr370146	regulatory region 370146	139 bp upstream
Rr520089	regulatory region 520089	1819 bp distal
Rr520090	regulatory region 520090	348 bp distal
Rr520091	regulatory region 520091	242 bp distal
Rr520092	regulatory region 520092	within coordinates
Rr520093	regulatory region 520093	205 bp proximal
Rr520094	regulatory region 520094	509 bp proximal