GGGCA GACTGCTCTT CCAAAGGTCC K GAGTTCAAAT CCCAGCAACC ACATG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss147409299 | ENSMUSSNP4975511 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | G | ||
ss320487081 | CHEV_2_121942220 | CHEVERUD | SCREENING_POP | f | SNP | T | G | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs50307244 | SNP | G | G | G | T | G |
Location: Chr2:121946965 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12168 | CpG island 12168 | 1473 bp proximal | ||||||
Rr55508 | regulatory region 55508 | 835 bp proximal | ||||||
Rr58060 | regulatory region 58060 | within coordinates | ||||||
Rr373779 | regulatory region 373779 | 912 bp upstream | ||||||
Spg11 | SPG11, spatacsin vesicle trafficking associated | within coordinates | ||||||
Tssr19802 | transcription start site region 19802 | 440 bp upstream | ||||||
Tssr25950 | transcription start site region 25950 | 1833 bp downstream | ||||||
Tssr25951 | transcription start site region 25951 | 1880 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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