rs50307244 SNP Detail

Summary

• ID
  rs50307244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121946965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA GACTGCTCTT CCAAAGGTCC
  K
  GAGTTCAAAT CCCAGCAACC ACATG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409299	ENSMUSSNP4975511	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320487081	CHEV_2_121942220	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50307244					SNP	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121946965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1473 bp proximal
Rr373779	regulatory region 373779	912 bp upstream
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	440 bp upstream
Tssr25950	transcription start site region 25950	1833 bp downstream
Tssr25951	transcription start site region 25951	1880 bp downstream