rs50307503 SNP Detail

Summary

• ID
  rs50307503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTGCTT TTAAAAGATG
  TGAAGCAGTC TGGTATAGAC AAAGTCCTAG TCTTGAGCTA TATAATCTAA GGGAAAGCAG
  CAGAGCTATA AGAGACCAGT CACCATGATG GTGACTCTGT ATGTAAGTTA AGAGGACTAG
  CTTTGGAGTT TAGAGACCTG GGTTCTCCTC TGCTCTGGTA CCCCTTACCT TGTCAGCTTA
  Y
  GTTGCCTGTG AACTCTTGCC TTACCAAGAG TTCAAATATA CACTTGAGGG AGAAGCTGTT
  AAATGGCTTC CTTACATACA TCTATTACTG ATCTATTAGT ACTATCCTAA AGGGCCATTA
  TAGTGAATGA TATGGGTTAG TGCACTTGTA TTCCCTCTAT TTCTCTGCCA AACCGTGGTC
  TGTGGTCATA GCACTGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874352	ENSMUSSNP4151837	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957947	CHEV_3_127594662	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50307503					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685393 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1820 bp distal
Rr584893	regulatory region 584893	1423 bp distal
Rr584894	regulatory region 584894	31 bp distal
Rr584895	regulatory region 584895	1596 bp proximal