rs50308602 SNP Detail

Summary

• ID
  rs50308602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134296340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA GGTCAGGACC CACCCCTAAG
  Y
  TGTCAGCTCT AACATCTGCA AATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144502854	ENSMUSSNP2543877	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321695280	CHEV_5_134743356	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50308602					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134296340 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	within coordinates
Gtf2i	general transcription factor II I	within coordinates
Rr621980	regulatory region 621980	1889 bp proximal
Tssr53620	transcription start site region 53620	1408 bp upstream
Tssr53621	transcription start site region 53621	868 bp upstream
Tssr53622	transcription start site region 53622	1731 bp downstream