rs50309508 SNP Detail

Summary

• ID
  rs50309508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73188139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGAAAAA TGAGTTATAC
  TTAGGCTTAA CCTCTTATTG ATAATGTACT TAAGTTCGTC TGTGATATTC TTAAAGACAA
  AAGTATTTCA ACGTATAAAA CTTATTATGT GTAGGCCATT ACAAATGTCT TTTTAGTTAA
  GATGATAATG CCACCTCAAG GTTAGAAAGA GAACCACAGA ATAACAGAAG AGAAAATAAA
  Y
  TATCTAGCCT AGCTCTCCAG AAACATGAAG GTTTAAATAG TAAAATTACA TAAAAAAGAT
  GTAAAAATTA AGAAAACACA TGAGGCTATT ACAATGGCTT ATCTATAGAA AATGAGCACA
  CACACACACA CACAAATAAG CAATATGGCC TCTGTAAAAA AAAAAAAAAA AAGAAAAGAA
  ACTGTTTTAC AGTTTTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146759679	ENSMUSSNP5412096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50309508					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73188139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			578 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			529 bp upstream
Rr559132	regulatory region 559132			396 bp distal
Rr559133	regulatory region 559133			1618 bp proximal
Rr559134	regulatory region 559134			1719 bp proximal