rs50309775 SNP Detail

Summary

• ID
  rs50309775
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3414770 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AACACTCCCA GCTTTAAAGC
  AGAGAGATGG GTCCCCCAGC TCTTTCCTCT CCGAGACCCA GAGATTACAA CCACCTTCCT
  CATAACCCAT AGCATTCTTT TCCTCCTGGG CACAAGAATC AGACCGTCCT CTGTTCGGGG
  AGTCCTTCCC CAGGACCTAG GACTCCCAAC TCTAAGACCT AGGAAGGTCC AAACTTCAGG
  W
  TTTTTCTCTC CTCAAATCCA AAGGCACTAT CTTCAGAGCT CCATCTGCTC CAGACTTCCA
  GGGGCTGGAA TACCCCTAAC ACCAGCACCA CCACCCATCC CCCAACTCCG ATCCCGCCCC
  ACCTCTGTCT TCAAACTGGC AGTCTGGGCC CAATACATCA CCTCTTTGAG AAGAAAAGAG
  GAAGCAGCGA AGGCAAAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63342972	NES17508912	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50309775					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63342972	NES17508912	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3414770 () rs orientation: reverse

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	within coordinates
Cpgi18210	CpG island 18210	355 bp proximal
Gm72265	predicted gene, 72265	within coordinates
Rr641804	regulatory region 641804	1957 bp proximal
Tssr64254	transcription start site region 64254	283 bp downstream
Tssr64255	transcription start site region 64255	66 bp downstream
Tssr64256	transcription start site region 64256	41 bp downstream
Tssr64257	transcription start site region 64257	623 bp upstream
Tssr64258	transcription start site region 64258	686 bp upstream
Tssr64259	transcription start site region 64259	1126 bp upstream
Tssr64260	transcription start site region 64260	1156 bp upstream