rs50310537 SNP Detail

Summary

• ID
  rs50310537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGGACT GGAGTGTGTT
  CCAGACTTAT TGGCTTTTGC GCTAGCCAGT CTCTCCCGGG AGGAGGACAG GCCGAAATGC
  CCACGGCGCA GTCGGCTACC AGAAGCTGCG AGTGGGGGTA GGTGGGCGGC AAGAAGGGAG
  GGCCTTTTTT TTTAATGTAG TGTGTTGTGT TTGAAGGAGA GAATTTATTT CCGCTTCCTA
  Y
  GATTGCAAAA ACGTGGGGGC GGGGGGGGGG CGGGAAATCG GTCAGCTTTA GGGCTGTTCT
  TAACAGTGTT GGATGTTATT CCCATTTCAC AGATGAGGAA TAATTTCCGG GAGAACTGAT
  CTTCATTCTG ATTTATTTAG AGGCAGCTGG AGCCCCTACT TTCTGAGAAA ACTTTCACCT
  CTACCTGGGG AGGCTACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136852132	ENSMUSSNP2253479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323137464	CHEV_9_99777966	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50310537					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1077 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	823 bp downstream
Rr685463	regulatory region 685463	1819 bp distal
Rr685464	regulatory region 685464	1388 bp distal
Rr685465	regulatory region 685465	887 bp distal
Rr685466	regulatory region 685466	236 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1377 bp upstream
Tssr91083	transcription start site region 91083	1354 bp upstream
Tssr91084	transcription start site region 91084	1335 bp upstream