rs50310638 SNP Detail

Summary

• ID
  rs50310638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146788741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC TGCTTTTCAT TATTCAGTTC
  W
  GTTCTGGGTC TGACAGGGGA AACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss134003326	ENSMUSSNP710112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss322083547	CHEV_6_146835765	CHEVERUD	SCREENING_POP	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50310638					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146788741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	783 bp proximal
Gm66444	predicted gene, 66444	759 bp downstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	1244 bp upstream
Rr139437	regulatory region 139437	1541 bp distal
Rr139438	regulatory region 139438	1141 bp distal
Rr145955	regulatory region 145955	459 bp proximal
Tssr59600	transcription start site region 59600	1238 bp upstream
Tssr59601	transcription start site region 59601	1350 bp upstream
Tssr59602	transcription start site region 59602	1389 bp upstream