rs50311773 SNP Detail

Summary

• ID
  rs50311773
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCATGT CGCCCTGACC
  CTCCACTCTC TGCTTCAGGC TGGGGGCCCG GGCTCGGTCT CCTGAATCGG TCAGATCCGA
  TGTGTCTTTC ACACCCGAAA CCAGCTCGTC TCGTTCTCTC TCCCTGCTTC ACGAATTTGC
  CACCCGAGAC CTCGTGGGTT AAGCCCATCG CCGAATGGCG CAAGCTAGCT TAGGCTTCAT
  W
  GAGGAGTTCC AGGCAGCAAC CGCGAGATAA CGCTTCCCAA GTACTTGTAG AGCGCTGTAT
  ACGCGCACAG ATATATCAGC TATGGAAAGT AGGCCACGAA GTCCTAACCA CGAGACTCTT
  CAACATATTT TTGTTTGTTT TGTTTTAACA TTTATTGTGG TGGTCAGAGG AGAGCTAGCA
  GGAGTTGGTT CTCTGACCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149123039	ENSMUSSNP3313135	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50311773					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466339 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	257 bp upstream
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	842 bp downstream
Tssr66426	transcription start site region 66426	975 bp downstream
Tssr66427	transcription start site region 66427	607 bp downstream
Tssr66428	transcription start site region 66428	581 bp downstream
Tssr66429	transcription start site region 66429	540 bp downstream
Tssr66430	transcription start site region 66430	509 bp downstream
Tssr72230	transcription start site region 72230	1258 bp upstream
Tssr72231	transcription start site region 72231	1233 bp upstream
Tssr72232	transcription start site region 72232	989 bp upstream
Tssr72233	transcription start site region 72233	307 bp upstream
Tssr72234	transcription start site region 72234	39 bp downstream