rs50312449 SNP Detail

Summary

• ID
  rs50312449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117941755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACGTTA AGAAACACGA
  GTGGGCACAA AATTGTTTTT CAAGACACAA TTTCAATTTT GCCTTGAGGG AGCGGGATAT
  AAATTCGCTT CCTTAAAATG CCGCTAAAAA CTCTCCGAAA GGATCCCCTA AATCAGAATA
  CATATACCGC CCCCAAGCGG CCATCTGAGG AAGCAAAGTA GAACTGGGGA AAAAACTCTC
  K
  ACTTGGACAG TGAGTCGGAA GGCGACCTCC GTGCACGGTC CTGCTGGCCC TGTGCAACAC
  CGTGCTGACA CCCTTAGTGA GTCAGACGGA AGGCAGGCGT GCGGGACAGG AGTGAAGCGC
  AAAGTATAGA TGACATGGGA TCCCCCACCC ACCAGGATTG ACTCAGGAGG CAGCTTCCTT
  TAAGGGGTCC AACCTTTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147290675	ENSMUSSNP5073685	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50312449					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117941755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	within coordinates
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	1175 bp proximal
D2Mit510	DNA Segment, Chr 2, Massachusetts Institute of Technology-510	1618 bp distal
Gm13986	predicted gene 13986	72 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	within coordinates
Thbs1	thrombospondin 1	602 bp upstream
Tssr19527	transcription start site region 19527	218 bp upstream
Tssr19528	transcription start site region 19528	605 bp upstream
Tssr19529	transcription start site region 19529	1090 bp upstream
Tssr19530	transcription start site region 19530	1380 bp upstream
Tssr19531	transcription start site region 19531	1775 bp upstream
Tssr19532	transcription start site region 19532	1817 bp upstream