rs50312598 SNP Detail

Summary

• ID
  rs50312598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAACTTG GGCTCTCTAG
  AGGAGCAGCA ACACTTTGAA CTGTGGATCC ATCTCTCTAA CCTCATATGC ATAGATCTAA
  AGCAAAGCAG AGGTAATAAT TAAATGAATT ATTTACACAA CAACATGGAG GGTGATTTTC
  TTGGTAGCCT CGAGGAGACT GGGCTAGAGG AAGCCAACAT TAGCAAGGAG TTGACTGGTG
  Y
  GACTTTAACT GCCATTCTGT ATCTCTTCAC ACTCAGGGTT GAGCATTTCT GTCCAGGTAC
  CAGCTTCTGA TATACCTCAC ATCACAAACA AATGAGGGGG AGTCTAAGCT TCTTGATGCC
  TGTTGAGGTC AATTCACTTA GAATTGCCAA TGTCTTTCTA TAACTGGGAC CAGCCTGATG
  GGTGACTCTG TACTTATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62737811	NES17343047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50312598					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737811	NES17343047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670092 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	1250 bp upstream
Rr527086	regulatory region 527086	760 bp proximal
Rr527087	regulatory region 527087	1261 bp proximal
Tssr144671	transcription start site region 144671	819 bp upstream
Tssr144672	transcription start site region 144672	1121 bp upstream
Tssr144673	transcription start site region 144673	1162 bp upstream
Tssr144674	transcription start site region 144674	1185 bp upstream
Tssr144675	transcription start site region 144675	1222 bp upstream