rs50313587 SNP Detail

Summary

• ID
  rs50313587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGCTG TAAAGTCTAA
  CTCTTGGTTT TGGTCAAGGT GAGCCTCTAA GGCTTCCCGA TGAAGAAGAG CTGGGGTTTC
  CAGTGAGAGG CTTGAAATTC AGGTGTAGGC TCTCGCTCTT ATCCTGACTG AGTTCAGTGA
  AAAAGCAATA GGTATTGTTC TTGTTTACAA CGTACGCGAA GTCATGCCTT GACATTTTTA
  Y
  TCTTAACATC ATTTGGAAAG GTTCAAGCTG GTACAATTGT AACGCCAGCT CTACTATTCT
  AGTTTCAAAG CGCCCAGAGT GTTTATTGCT GGAAAGTCCA GCAATAGGTA GCAGGTCCCT
  TGTGGAGGCT AGAGATGGTT TCGTTTGGAG AGTAAACCAA GGTCCAGGAT GAAGTCAAAA
  GAAGGGGGCT CTGCAACCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198258	NES16702734	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50313587					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198258	NES16702734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052805 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1742 bp upstream
Rr614420	regulatory region 614420	1753 bp distal
Rr614421	regulatory region 614421	1884 bp distal
Rr614422	regulatory region 614422	1063 bp distal
Tssr47224	transcription start site region 47224	1237 bp downstream
Tssr47225	transcription start site region 47225	1135 bp downstream
Tssr47226	transcription start site region 47226	1066 bp downstream
Tssr47227	transcription start site region 47227	872 bp downstream
Tssr47228	transcription start site region 47228	809 bp downstream
Tssr47229	transcription start site region 47229	788 bp downstream
Tssr47230	transcription start site region 47230	763 bp downstream
Tssr47231	transcription start site region 47231	733 bp downstream
Tssr47232	transcription start site region 47232	586 bp downstream
Tssr47233	transcription start site region 47233	536 bp downstream
Tssr47234	transcription start site region 47234	501 bp downstream
Tssr47235	transcription start site region 47235	242 bp upstream
Tssr47236	transcription start site region 47236	262 bp upstream
Tssr47237	transcription start site region 47237	311 bp upstream
Tssr47238	transcription start site region 47238	317 bp upstream
Tssr47239	transcription start site region 47239	377 bp upstream
Tssr47240	transcription start site region 47240	389 bp upstream
Tssr47241	transcription start site region 47241	404 bp upstream
Tssr47242	transcription start site region 47242	441 bp upstream
Tssr47243	transcription start site region 47243	464 bp upstream
Tssr47244	transcription start site region 47244	498 bp upstream
Tssr47245	transcription start site region 47245	518 bp upstream
Tssr47246	transcription start site region 47246	569 bp upstream
Tssr47247	transcription start site region 47247	613 bp upstream
Tssr47248	transcription start site region 47248	676 bp upstream
Tssr47249	transcription start site region 47249	746 bp upstream
Tssr47250	transcription start site region 47250	884 bp upstream
Tssr47251	transcription start site region 47251	948 bp upstream
Tssr47252	transcription start site region 47252	1000 bp upstream
Tssr51810	transcription start site region 51810	1803 bp upstream
Tssr51811	transcription start site region 51811	1749 bp upstream
Tssr51812	transcription start site region 51812	719 bp upstream
Tssr51813	transcription start site region 51813	702 bp upstream
Tssr51814	transcription start site region 51814	261 bp downstream
Tssr51815	transcription start site region 51815	295 bp downstream
Tssr51816	transcription start site region 51816	329 bp downstream