rs50314196 SNP Detail

Summary

• ID
  rs50314196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTTGTT ACTAAGGTAA
  ACAATTTTAG ATGACCTACT TTTTTCCCAG AGCTGCCCCA ACATAAAAGC TAAACTTAGG
  CATTTGGCGA GGGGGCCTCT AACTCCATAG GCGGAAGTCT TGGCGATGGC CTTCAAGGTG
  TACCATGAGA GAGATGAGAA AGCCCAAAAA CAAAAACACT GCAAGCTGGC AAAGGCTGTC
  Y
  GACCAGCTCT AGCTACTACC CCGAACTCCT GGCCTTCTAA GGTTCAGGGA CCACTAGCCC
  CTTGCTATAG ATGTGGTCAG CAAGGTCATT GGGTGAGGTT TTGCCCTACG CCCCACAAGC
  CAAGGGGACC GTGTCCTAAG TGCCGTCAGG AGGGACATTG GGCTGTCGAT AGCCCTCGTG
  TTGCACAGAA CAGAGGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668113	ENSMUSSNP3242593	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323016430	CHEV_9_78370939	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50314196					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430414 () rs orientation: forward

Symbol	Name	Function Class
Gm47430	predicted gene, 47430	975 bp downstream
Gm69163	predicted gene, 69163	1887 bp upstream
Rr206776	regulatory region 206776	1013 bp distal
Rr383643	regulatory region 383643	1311 bp upstream