rs50315074 SNP Detail

Summary

• ID
  rs50315074
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44439337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CCCAGCAACA CACACAAGTC
  A
  ACTTTTGCTG CTCTGAGCAC ACTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136396675	ENSMUSSNP1312197	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322941053	CHEV_9_44336123	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50315074					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44439337 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1596 bp upstream
Rr401337	regulatory region 401337	1249 bp downstream
Tssr89168	transcription start site region 89168	1617 bp upstream
Tssr89169	transcription start site region 89169	1600 bp upstream
Tssr89170	transcription start site region 89170	1539 bp upstream
Tssr89171	transcription start site region 89171	1525 bp upstream