rs50316571 SNP Detail

Summary

• ID
  rs50316571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10992015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCATT GCGCATGAGG
  CAATGGTTTC CCTCTCTTGC ATTTTTACAA CAAAACAAAC AAAATAAGGA ATAAGACACA
  GCATCTTTCA CTATTCTATA TTTTACTAGC ACAACCAAAG CTATGTGTTG CCCACAACAT
  CGTATAGACT CAGTACAGCC ACGGAGGCTT CCTCTAAGAC AAAAGGGGAC ACTTTCAGGG
  Y
  AGAGTCTCTG GCTGATCACT TGAGCAGGGA AAAAAAAAGT GATTTCTAAG TTACTGATCT
  TAGAAGGGGT CACTTTTCTG GGCATATTTC CCACAACAAA GTCCAAAACA GATGAACAGA
  AAGAACTTGT TTCTGATTAC AGCATCACTG ATACATATAT GGAGAGTAGA AGAGGTCTGA
  TGCTCTCTAA TTAAATGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741555	NES17678358	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	C		C	C	T	C		T
ss324260889	CHEV_13_10941225	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50316571					SNP	T	C	T	C	T	T	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741555	NES17678358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10992015 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	within coordinates
Rr278201	regulatory region 278201	61 bp proximal