rs50318489 SNP Detail

Summary

• ID
  rs50318489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140429988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATAGTGT CTCAACAGGG ACAGGGGCCT TGCACATACT
  ACCCCGTGAA GTACGGACAC AAGACTGTCA CACTGGGAAT GTCACTTCAC TAAGGCTGAA
  R
  TTGATAGTAA CACCCTACCC CATAAACAGA AGTGTGTTGT TCCCATGGCT GTCAGGCAGC
  TTAAGGCCTC TGGGGAATCA AGGTCCCCAA CCTAGCCATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072213	NES16047769	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50318489					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072213	NES16047769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140429988 () rs orientation: forward

Symbol	Name	Function Class
Cimap1a	ciliary microtubule associated protein 1A	within coordinates
Gm45785	predicted gene 45785	within coordinates
Rr657759	regulatory region 657759	1993 bp distal
Rr657760	regulatory region 657760	675 bp distal