rs50318761 SNP Detail

Summary

• ID
  rs50318761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31766373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATGACT GATGGTTGTG
  AGCCACTCAC CATGTGGTTA CTGGGAATTG AACTCAGGAC CTTTGTAAGA GCAATCAGTA
  CTCTTAACCA CTGAGCCAAC TCTCCAGCAT CCCTCCCCCC AATTTAAATT TTTTTTTTTG
  TTTTTTGGAT TTTTGTATTA ATAACTTTAA AGGAGTAGTT TGAGACCGTG GCAGAACTCA
  R
  CAAGATGTGC ACACTAGCCA GGGCCAATGG CACAAGCCTG CAATCCCAGT TACTCTGGAG
  CCTGGGACAG GGGGAATGCA AGCTCAAGGC CTGATAGGGC TACAGATTAT GTTCAAGGCA
  GTCTGGCCAA TTGAGTGAAC ACCAATGTCA AAAAATTTAA AAATTAACAA AAAGTATAAT
  GTCAGAAATC ACCTAAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012832	NES17430082	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50318761					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012832	NES17430082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31766373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	517 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr370349	regulatory region 370349	1188 bp upstream
Rr405571	regulatory region 405571	823 bp upstream
Rr405572	regulatory region 405572	1477 bp upstream
Rr535275	regulatory region 535275	375 bp distal
Rr535276	regulatory region 535276	805 bp distal
Rr535277	regulatory region 535277	757 bp distal
Rr535278	regulatory region 535278	within coordinates
Rr535279	regulatory region 535279	871 bp proximal
Rr535280	regulatory region 535280	1074 bp proximal
Rr535281	regulatory region 535281	1140 bp proximal
Rr535282	regulatory region 535282	1654 bp proximal
Sap130	Sin3A associated protein	1063 bp upstream
Tssr150348	transcription start site region 150348	996 bp upstream
Tssr150349	transcription start site region 150349	1048 bp upstream
Tssr150350	transcription start site region 150350	1054 bp upstream
Tssr150351	transcription start site region 150351	1754 bp upstream
Tssr152716	transcription start site region 152716	1449 bp downstream