rs50319239 SNP Detail

Summary

• ID
  rs50319239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77127988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGAAC TTACATGGGG
  GACAGACTCC TTTTATCTGG AATCTTCTGT TTGTTAAAGT AAATTAATAA ACCAAACAAA
  AAACCAAACA AAAGGCAGCC AGTGAGAAGC TGCAGATTTG TAGTGAAAGG GAAGGGGACT
  TTAAGGGTGT CGGAATGTGA TTCCATTTCC GAGGTAATTT TGTAGCATTT CTTAGCTGCC
  W
  TTGCAAACTT TATGGAAACC TGTTAACCGC TGGCAGCCCT GAGCCCTAGG TTTGCATTTT
  GAACGGAGAT TATGCACAGG AAAGACAAGT TCGTCCTGTC ATGTGACCTG AGCTGCCTTA
  TCAAAGCAAA ATATGGCAGC CGCATTCTTT CCTGAGAGAA CGAAGTTCAT TATGTCCTTG
  CCACCTGTTA CGTTCACTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396932495	MGP_WTSI_16_77331345	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50319239					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396932495	MGP_WTSI_16_77331345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77127988 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	1185 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	1750 bp distal
Rr518273	regulatory region 518273	1496 bp distal
Rr518274	regulatory region 518274	700 bp distal
Rr518275	regulatory region 518275	within coordinates
Tssr139047	transcription start site region 139047	1855 bp downstream
Tssr139048	transcription start site region 139048	1747 bp downstream
Tssr139049	transcription start site region 139049	1723 bp downstream
Tssr139050	transcription start site region 139050	1591 bp downstream
Tssr139051	transcription start site region 139051	1575 bp downstream
Tssr139052	transcription start site region 139052	1547 bp downstream
Tssr139053	transcription start site region 139053	1481 bp downstream
Tssr139054	transcription start site region 139054	1444 bp downstream
Tssr141826	transcription start site region 141826	1549 bp upstream