rs50319308 SNP Detail

Summary

• ID
  rs50319308
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT GGAGCAGATG TTACAGGAAG
  T
  TGTGAACGGT CCTACTAAAG ATGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132546814	ENSMUSSNP3031358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323782822	CHEV_11_88784647	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50319308					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814159 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	687 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	935 bp downstream
Tssr110048	transcription start site region 110048	950 bp downstream
Tssr110049	transcription start site region 110049	1004 bp downstream
Tssr110050	transcription start site region 110050	1206 bp downstream
Tssr110051	transcription start site region 110051	1247 bp downstream
Tssr110052	transcription start site region 110052	1271 bp downstream
Tssr110053	transcription start site region 110053	1299 bp downstream
Tssr110054	transcription start site region 110054	1366 bp downstream